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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114216655, updated on 15-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSEJUG00000009409
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998671.1 (7259498..7530655, complement)

NW_020998671.1Genomic Context describing neighboring genes Neighboring gene chymotrypsinogen B-like Neighboring gene ovochymase 1 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene histone H3.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020998671 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998671.1 Reference ASM402803v1 Primary Assembly

    Range
    7259498..7530655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028113293.1 → XP_027969094.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Related
    ENSEJUP00000012693.1, ENSEJUT00000014278.1
    Conserved Domains (3) summary
    TIGR02917
    Location:469 → 875
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:582 → 610
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:313 → 364
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_028113292.1 → XP_027969093.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    ENSEJUP00000012675.1, ENSEJUT00000014259.1
    Conserved Domains (3) summary
    TIGR02917
    Location:531 → 937
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:644 → 672
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:353 → 426
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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