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LOC114212789 zinc finger and BTB domain-containing protein 26 [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114212789, updated on 9-Nov-2023

Summary

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Gene symbol
LOC114212789
Gene description
zinc finger and BTB domain-containing protein 26
See related
EnsemblRapid:ENSEJUG00000001400
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
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Genomic context

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See LOC114212789 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998653.1 (9506094..9524632, complement)

NW_020998653.1Genomic Context describing neighboring genes Neighboring gene phosducin like Neighboring gene small nucleolar RNA SNORD90 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene RAB GTPase activating protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene G protein-coupled receptor 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020998653 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 26; zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998653.1 Reference ASM402803v1 Primary Assembly

    Range
    9506094..9524632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028107767.1 → XP_027963568.1  zinc finger and BTB domain-containing protein 6 isoform X4

    Conserved Domains (5) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:330 → 400
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)

  2. XM_028107768.1 → XP_027963569.1  zinc finger and BTB domain-containing protein 6 isoform X4

    Conserved Domains (5) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:330 → 400
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)

  3. XM_028107762.1 → XP_027963563.1  zinc finger and BTB domain-containing protein 6 isoform X1

    Related
    ENSEJUP00000001744.1, ENSEJUT00000001980.1
    Conserved Domains (5) summary
    sd00017
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:380 → 450
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam00096
    Location:375 → 397
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 413
    zf-H2C2_2; Zinc-finger double domain
    cd18197
    Location:58 → 173
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)

  4. XM_028107769.1 → XP_027963570.1  zinc finger and BTB domain-containing protein 6 isoform X4

    Conserved Domains (5) summary
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam15909
    Location:330 → 400
    zf-C2H2_8; C2H2-type zinc ribbon
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain
    cd18197
    Location:8 → 123
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)

  5. XM_028107765.1 → XP_027963566.1  zinc finger and BTB domain-containing protein 26 isoform X3

    Conserved Domains (4) summary
    sd00017
    Location:300 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:298 → 320
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:315 → 337
    zf-H2C2_2; Zinc-finger double domain
    cd18214
    Location:8 → 129
    BTB_POZ_ZBTB26_Bioref; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 26 (ZBTB26)

  6. XM_028107770.1 → XP_027963571.1  zinc finger and BTB domain-containing protein 26 isoform X2

    Conserved Domains (5) summary
    COG5236
    Location:269 → 381
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:300 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18214
    Location:8 → 129
    BTB_POZ_ZBTB26_Bioref; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 26 (ZBTB26)
    pfam00096
    Location:298 → 320
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:315 → 337
    zf-H2C2_2; Zinc-finger double domain

  7. XM_028107763.1 → XP_027963564.1  zinc finger and BTB domain-containing protein 26 isoform X2

    Conserved Domains (5) summary
    COG5236
    Location:269 → 381
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:300 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18214
    Location:8 → 129
    BTB_POZ_ZBTB26_Bioref; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 26 (ZBTB26)
    pfam00096
    Location:298 → 320
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:315 → 337
    zf-H2C2_2; Zinc-finger double domain

  8. XM_028107764.1 → XP_027963565.1  zinc finger and BTB domain-containing protein 26 isoform X2

    Conserved Domains (5) summary
    COG5236
    Location:269 → 381
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    sd00017
    Location:300 → 320
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18214
    Location:8 → 129
    BTB_POZ_ZBTB26_Bioref; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 26 (ZBTB26)
    pfam00096
    Location:298 → 320
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:315 → 337
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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