U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SDC1 syndecan 1 [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114205777, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SDC1
Gene description
syndecan 1
See related
EnsemblRapid:ENSEJUG00000019726
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998620.1 (16130678..16158342, complement)

NW_020998620.1Genomic Context describing neighboring genes Neighboring gene matrilin 3 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene U6 spliceosomal RNA Neighboring gene pumilio RNA binding family member 2 Neighboring gene 60S ribosomal protein L19 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020998620 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998620.1 Reference ASM402803v1 Primary Assembly

    Range
    16130678..16158342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028099308.1 → XP_027955109.1  syndecan-1 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:51 → 190
    PHA03247; large tegument protein UL36; Provisional
    pfam01034
    Location:231 → 294
    Syndecan; Syndecan domain

  2. XM_028099307.1 → XP_027955108.1  syndecan-1 isoform X1

    Related
    ENSEJUP00000026844.1, ENSEJUT00000029834.1
    Conserved Domains (1) summary
    pfam01034
    Location:242 → 305
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.