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SGCA sarcoglycan alpha [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114201171, updated on 15-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSEJUG00000017179
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998844.1 (280905..290738, complement)

NW_020998844.1Genomic Context describing neighboring genes Neighboring gene collagen type I alpha 1 chain Neighboring gene uncharacterized LOC114201141 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020998844 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998844.1 Reference ASM402803v1 Primary Assembly

    Range
    280905..290738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028093719.1 → XP_027949520.1  alpha-sarcoglycan

    Related
    ENSEJUP00000023479.1, ENSEJUT00000026137.1
    Conserved Domains (1) summary
    pfam05510
    Location:26 → 349
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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