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LOC114201042 plectin-like [ Eumetopias jubatus (Steller sea lion) ]

Gene ID: 114201042, updated on 9-Nov-2023

Summary

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Gene symbol
LOC114201042
Gene description
plectin-like
See related
EnsemblRapid:ENSEJUG00000021614
Gene type
protein coding
RefSeq status
MODEL
Organism
Eumetopias jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Eumetopias
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Genomic context

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See LOC114201042 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current ASM402803v1 (GCF_004028035.1) Unplaced Scaffold NW_020998842.1 (799243..863133)

NW_020998842.1Genomic Context describing neighboring genes Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene sphingomyelin phosphodiesterase 5 Neighboring gene spermatogenesis and centriole associated 1 Neighboring gene uncharacterized LOC114201038 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1 Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene epiplakin-like Neighboring gene nuclear receptor binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020998842 Unplaced Scaffold Reference ASM402803v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eumetopias jubatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM402803v1 Primary Assembly

Genomic

  1. NW_020998842.1 Reference ASM402803v1 Primary Assembly

    Range
    799243..863133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028093478.1 → XP_027949279.1  plectin-like isoform X2

    Conserved Domains (6) summary
    PTZ00121
    Location:1216 → 1966
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3048 → 3084
    PLEC; Plectin repeat
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:641 → 830
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3405 → 3444
    Plectin; Plectin repeat
    pfam17380
    Location:1006 → 1330
    DUF5401; Family of unknown function (DUF5401)

  2. XM_028093476.1 → XP_027949277.1  plectin-like isoform X2

    Conserved Domains (6) summary
    PTZ00121
    Location:1216 → 1966
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3048 → 3084
    PLEC; Plectin repeat
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:641 → 830
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3405 → 3444
    Plectin; Plectin repeat
    pfam17380
    Location:1006 → 1330
    DUF5401; Family of unknown function (DUF5401)

  3. XM_028093477.1 → XP_027949278.1  plectin-like isoform X2

    Conserved Domains (6) summary
    PTZ00121
    Location:1216 → 1966
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3048 → 3084
    PLEC; Plectin repeat
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:641 → 830
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3405 → 3444
    Plectin; Plectin repeat
    pfam17380
    Location:1006 → 1330
    DUF5401; Family of unknown function (DUF5401)

  4. XM_028093481.1 → XP_027949282.1  plectin-like isoform X5

    Related
    ENSEJUP00000032847.1, ENSEJUT00000036369.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1181 → 1931
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3013 → 3049
    PLEC; Plectin repeat
    COG5069
    Location:33 → 250
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:606 → 795
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3370 → 3409
    Plectin; Plectin repeat
    pfam17380
    Location:971 → 1295
    DUF5401; Family of unknown function (DUF5401)

  5. XM_028093475.1 → XP_027949276.1  plectin-like isoform X1

    Related
    ENSEJUP00000032850.1, ENSEJUT00000036371.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1332 → 2082
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3164 → 3200
    PLEC; Plectin repeat
    COG5069
    Location:184 → 512
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:757 → 946
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3521 → 3560
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17380
    Location:1122 → 1446
    DUF5401; Family of unknown function (DUF5401)

  6. XM_028093483.1 → XP_027949284.1  plectin-like isoform X7

    Related
    ENSEJUP00000032858.1, ENSEJUT00000036379.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1190 → 1940
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3022 → 3058
    PLEC; Plectin repeat
    COG5069
    Location:42 → 259
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:615 → 804
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3379 → 3418
    Plectin; Plectin repeat
    pfam17380
    Location:980 → 1304
    DUF5401; Family of unknown function (DUF5401)

  7. XM_028093479.1 → XP_027949280.1  plectin-like isoform X3

    Related
    ENSEJUP00000032862.1, ENSEJUT00000036383.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1198 → 1948
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3030 → 3066
    PLEC; Plectin repeat
    COG5069
    Location:50 → 267
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3387 → 3426
    Plectin; Plectin repeat
    pfam17380
    Location:988 → 1312
    DUF5401; Family of unknown function (DUF5401)

  8. XM_028093480.1 → XP_027949281.1  plectin-like isoform X4

    Related
    ENSEJUP00000032864.1, ENSEJUT00000036385.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1190 → 1940
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3022 → 3058
    PLEC; Plectin repeat
    COG5069
    Location:42 → 259
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:615 → 804
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3379 → 3418
    Plectin; Plectin repeat
    pfam17380
    Location:980 → 1304
    DUF5401; Family of unknown function (DUF5401)

  9. XM_028093482.1 → XP_027949283.1  plectin-like isoform X6

    Conserved Domains (6) summary
    PTZ00121
    Location:1096 → 1846
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2928 → 2964
    PLEC; Plectin repeat
    COG5069
    Location:1 → 165
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:521 → 710
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3285 → 3324
    Plectin; Plectin repeat
    pfam17380
    Location:886 → 1210
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein
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