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LOC114163077 cytochrome c oxidase subunit 2, mitochondrial [ Vigna unguiculata (cowpea) ]

Gene ID: 114163077, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114163077
Gene description
cytochrome c oxidase subunit 2, mitochondrial
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Vigna unguiculata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
Also known as
cox2
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Genomic context

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See LOC114163077 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM411807v1 (GCF_004118075.1) 9 NC_040287.1 (724311..728095)

Chromosome 9 - NC_040287.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 7 Neighboring gene two-component response regulator ARR2-like Neighboring gene protein FAR1-RELATED SEQUENCE 11-like Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 4-like Neighboring gene transfer RNA threonine (anticodon AGU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040287.1 Chromosome 9 Reference ASM411807v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Intracellular gene transfer in action: dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes. Adams KL, et al. Proc Natl Acad Sci U S A, 1999 Nov 23. PMID 10570164, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytochrome-c oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP synthesis coupled electron transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c oxidase subunit 2, mitochondrial
Names
Cytochrome c oxidase polypeptide II
XP_027902947.1
XP_027902948.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001376035.1 → NP_001362964.1  cytochrome c oxidase subunit 2, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AF211254, NBOW01000009
    UniProtKB/Swiss-Prot
    P32646, Q9LD17
    UniProtKB/TrEMBL
    A0A4D6NM92
    Conserved Domains (1) summary
    MTH00051
    Location:145 → 384
    COX2; cytochrome c oxidase subunit II; Provisional

RefSeqs of Annotated Genomes: Vigna unguiculata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM411807v1 Primary Assembly

Genomic

  1. NC_040287.1 Reference ASM411807v1 Primary Assembly

    Range
    724311..728095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028047146.1 → XP_027902947.1  cytochrome c oxidase subunit 2, mitochondrial

    Conserved Domains (1) summary
    MTH00051
    Location:145 → 384
    COX2; cytochrome c oxidase subunit II; Provisional

  2. XM_028047147.1 → XP_027902948.1  cytochrome c oxidase subunit 2, mitochondrial

    UniProtKB/Swiss-Prot
    P32646, Q9LD17
    UniProtKB/TrEMBL
    A0A4D6NM92
    Conserved Domains (1) summary
    MTH00051
    Location:145 → 384
    COX2; cytochrome c oxidase subunit II; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P32646.2 GenPept UniProtKB/Swiss-Prot:P32646

Gene LinkOut

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Molecular Biology Databases