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LOC11416270 callose synthase 3 [ Medicago truncatula (barrel medic) ]

Gene ID: 11416270, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11416270
Gene description
callose synthase 3
Locus tag
MtrunA17_Chr7g0214481
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11416270 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
42
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (533891..554666, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (406268..427003, complement)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 7.1 Neighboring gene putative E3 ubiquitin-protein ligase LIN Neighboring gene high mobility group B protein 15 Neighboring gene F-box protein SKIP23-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3
Names
glucan synthase-like protein
putative 1,3-beta-glucan synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    533891..554666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003620959.4 → XP_003621007.2  callose synthase 3

    UniProtKB/TrEMBL
    A0A072TWC2, A0A0C3W0S7, G7KWP5
    Conserved Domains (3) summary
    pfam02364
    Location:1058 → 1817
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:50 → 177
    Vta1; Vta1 like
    pfam14288
    Location:321 → 434
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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