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sgcg sarcoglycan, gamma [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114161572, updated on 15-Mar-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 18 NC_040245.1 (14389489..14404779)

Chromosome 18 - NC_040245.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene ribosomal protein S25 Neighboring gene sacsin molecular chaperone Neighboring gene tumor necrosis factor receptor superfamily member 19-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040245.1 Chromosome 18 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040245.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    14389489..14404779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028044926.1 → XP_027900727.1  gamma-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3B5M771
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 262
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_028044925.1 → XP_027900726.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3B5M771
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_028044924.1 → XP_027900725.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3B5M771
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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