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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114160773, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
21
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 17 NC_040244.1 (18021183..18136027, complement)

Chromosome 17 - NC_040244.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G-protein coupled receptor 22-like Neighboring gene uncharacterized LOC114160777 Neighboring gene uncharacterized LOC114160778 Neighboring gene importin 8 Neighboring gene uncharacterized LOC114160823

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040244.1 Chromosome 17 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040244.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    18021183..18136027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028043538.1 → XP_027899339.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:461 → 856
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:282 → 356
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_028043541.1 → XP_027899342.1  protein O-mannosyl-transferase TMTC1 isoform X4

    Conserved Domains (3) summary
    TIGR02917
    Location:309 → 704
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:130 → 204
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_028043542.1 → XP_027899343.1  protein O-mannosyl-transferase TMTC1 isoform X5

    Conserved Domains (3) summary
    TIGR02917
    Location:309 → 704
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:322 → 350
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:130 → 204
    DUF1736; Domain of unknown function (DUF1736)

  4. XM_028043539.1 → XP_027899340.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:460 → 816
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:282 → 356
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_028043540.1 → XP_027899341.1  protein O-mannosyl-transferase TMTC1 isoform X3

    Conserved Domains (3) summary
    TIGR02917
    Location:461 → 791
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:282 → 356
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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