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si:ch73-91k6.2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114158863, updated on 15-Mar-2024

Summary

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Gene symbol
si:ch73-91k6.2
Gene description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See si:ch73-91k6.2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 15 NC_040242.1 (20743742..20747283)

Chromosome 15 - NC_040242.1Genomic Context describing neighboring genes Neighboring gene thrombomodulin-like Neighboring gene thrombomodulin Neighboring gene BRO1 domain and CAAX motif containing Neighboring gene family with sequence similarity 177 member B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040242.1 Chromosome 15 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040242.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    20743742..20747283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028040754.1 → XP_027896555.1  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

    UniProtKB/TrEMBL
    A0A3B5KQI7
    Conserved Domains (1) summary
    pfam05060
    Location:69 → 413
    MGAT2; N-acetylglucosaminyltransferase II (MGAT2)
Nucleotide Protein
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