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zgc:101810 uncharacterized LOC114157412 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114157412, updated on 15-Mar-2024

Summary

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Gene symbol
zgc:101810
Gene description
uncharacterized LOC114157412
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See zgc:101810 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 14 NC_040241.1 (8998978..9006455, complement)

Chromosome 14 - NC_040241.1Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 3 Neighboring gene Ras and Rab interactor 1b Neighboring gene uncharacterized LOC114157969 Neighboring gene SIX homeobox 7 Neighboring gene beta-1,4-glucuronyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040241.1 Chromosome 14 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cortical patch IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-related protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040241.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    8998978..9006455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028038353.1 → XP_027894154.1  actin-related protein 2-like

    Conserved Domains (1) summary
    smart00268
    Location:6 → 388
    ACTIN; Actin
Nucleotide Protein
Heading Accession and Version

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