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galnt12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114156007, updated on 15-Mar-2024

Summary

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Gene symbol
galnt12
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See galnt12 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 13 NC_040240.1 (10626534..10644129, complement)

Chromosome 13 - NC_040240.1Genomic Context describing neighboring genes Neighboring gene elongator acetyltransferase complex subunit 2 Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 2 Neighboring gene POC1 centriolar protein homolog B (Chlamydomonas), like Neighboring gene uncharacterized LOC114155398

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040240.1 Chromosome 13 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040240.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    10626534..10644129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028036165.1 → XP_027891966.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X1

    UniProtKB/TrEMBL
    A0A3B5N0X9
    Conserved Domains (2) summary
    cd02510
    Location:133 → 427
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:441 → 573
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_028036167.1 → XP_027891968.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X3

    Conserved Domains (2) summary
    cd02510
    Location:30 → 324
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:338 → 470
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_028036166.1 → XP_027891967.1  polypeptide N-acetylgalactosaminyltransferase 12 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:35 → 329
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:343 → 475
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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