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sgca sarcoglycan, alpha [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114151868, updated on 15-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 10 NC_040237.1 (9324313..9330036)

Chromosome 10 - NC_040237.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene PR domain containing 9 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase-like Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040237.1 Chromosome 10 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040237.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    9324313..9330036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028029347.1 → XP_027885148.1  alpha-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A3B5L457
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 321
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_028029343.1 → XP_027885144.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3B5L457
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 351
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_028029344.1 → XP_027885145.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3B5L457
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 350
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  4. XM_028029346.1 → XP_027885147.1  alpha-sarcoglycan isoform X4

    Conserved Domains (1) summary
    pfam05510
    Location:3 → 245
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  5. XM_028029345.1 → XP_027885146.1  alpha-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam05510
    Location:3 → 246
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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