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rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114150882, updated on 15-Mar-2024

Summary

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Gene symbol
rfng
Gene description
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See rfng in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 9 NC_040236.1 (2873624..2885489, complement)

Chromosome 9 - NC_040236.1Genomic Context describing neighboring genes Neighboring gene Rac family small GTPase 3b Neighboring gene dicarbonyl/L-xylulose reductase Neighboring gene V-type proton ATPase 116 kDa subunit a-like Neighboring gene caveolae-associated protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040236.1 Chromosome 9 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase radical fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040236.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    2873624..2885489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028027636.1 → XP_027883437.1  beta-1,3-N-acetylglucosaminyltransferase radical fringe

    UniProtKB/TrEMBL
    A0A3B5MJQ0
    Conserved Domains (1) summary
    pfam02434
    Location:116 → 365
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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