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p3h2 prolyl 3-hydroxylase 2 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114150787, updated on 15-Mar-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 9 NC_040236.1 (11647615..11696728)

Chromosome 9 - NC_040236.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114150827 Neighboring gene claudin-19-like Neighboring gene uncharacterized LOC114150792 Neighboring gene coiled-coil domain containing 181 Neighboring gene oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040236.1 Chromosome 9 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040236.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    11647615..11696728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028027483.1 → XP_027883284.1  prolyl 3-hydroxylase 2

    UniProtKB/TrEMBL
    A0A3B5KTW0
    Conserved Domains (1) summary
    smart00702
    Location:446 → 644
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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