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colgalt2b collagen beta(1-O)galactosyltransferase 2b [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114150736, updated on 15-Mar-2024

Summary

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Gene symbol
colgalt2b
Gene description
collagen beta(1-O)galactosyltransferase 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
colgalt2
Orthologs
zebrafish all
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Genomic context

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See colgalt2b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 9 NC_040236.1 (15902212..15931413, complement)

Chromosome 9 - NC_040236.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 17A, depalmitoylase b Neighboring gene ral guanine nucleotide dissociation stimulator-like 1 Neighboring gene uncharacterized LOC114150737 Neighboring gene ER degradation enhancer, mannosidase alpha-like 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040236.1 Chromosome 9 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 2-like
Names
collagen beta(1-O)galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040236.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    15902212..15931413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028027361.1 → XP_027883162.1  procollagen galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A3B5LLK9
    Conserved Domains (2) summary
    cd00761
    Location:71 → 197
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:354 → 539
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

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