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LOC114149756 carbohydrate sulfotransferase 8-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114149756, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114149756
Gene description
carbohydrate sulfotransferase 8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC114149756 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 2 NC_040229.1 (9509159..9519037, complement)

Chromosome 2 - NC_040229.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114156231 Neighboring gene TBC1 domain family, member 15 Neighboring gene tryptophan hydroxylase 2 (tryptophan 5-monooxygenase) Neighboring gene apoptosis facilitator Bcl-2-like protein 14 Neighboring gene sorting nexin 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040229.1 Chromosome 2 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040229.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    9509159..9519037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028025831.1 → XP_027881632.1  carbohydrate sulfotransferase 8-like

    UniProtKB/TrEMBL
    A0A3B5MQR9
    Conserved Domains (1) summary
    pfam03567
    Location:158 → 387
    Sulfotransfer_2; Sulfotransferase family

  2. XM_028025841.1 → XP_027881642.1  carbohydrate sulfotransferase 8-like

    UniProtKB/TrEMBL
    A0A3B5MQR9
    Conserved Domains (1) summary
    pfam03567
    Location:158 → 387
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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