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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114149138, updated on 15-Mar-2024

Summary

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Gene symbol
c1galt1la
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
c1galt1a
Orthologs
zebrafish all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 1 NC_040228.1 (15031520..15038232, complement)

Chromosome 1 - NC_040228.1Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat containing 5b Neighboring gene zinc finger protein 385A Neighboring gene uncharacterized LOC114143943 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1a Neighboring gene solute carrier family 26 member 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040228.1 Chromosome 1 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like
Names
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040228.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    15031520..15038232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028024733.1 → XP_027880534.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:183 → 303
    Galactosyl_T; Galactosyltransferase

  2. XM_028024743.1 → XP_027880544.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A-like isoform X2

    Conserved Domains (1) summary
    cl21608
    Location:161 → 281
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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