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zic2a zic family member 2 (odd-paired homolog, Drosophila), a [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114147752, updated on 15-Mar-2024

Summary

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Gene symbol
zic2a
Gene description
zic family member 2 (odd-paired homolog, Drosophila), a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
zic2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 7 NC_040234.1 (9760030..9764772, complement)

Chromosome 7 - NC_040234.1Genomic Context describing neighboring genes Neighboring gene sodium leak channel, non-selective Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 4 Neighboring gene zic family member 5 (odd-paired homolog, Drosophila) Neighboring gene citrate lyase beta like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040234.1 Chromosome 7 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZIC 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040234.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    9760030..9764772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028022353.1 → XP_027878154.1  zinc finger protein ZIC 2

    UniProtKB/TrEMBL
    A0A3B5MKK7
    Conserved Domains (3) summary
    COG5189
    Location:297 → 381
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:279 → 295
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18366
    Location:218 → 263
    zf_ZIC; Zic proteins zinc finger domain
Nucleotide Protein
Heading Accession and Version

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