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tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114147748, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 7 NC_040234.1 (9606193..9623833)

Chromosome 7 - NC_040234.1Genomic Context describing neighboring genes Neighboring gene integrin, beta-like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene zic family member 2 (odd-paired homolog, Drosophila), a Neighboring gene zic family member 5 (odd-paired homolog, Drosophila)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040234.1 Chromosome 7 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040234.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    9606193..9623833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028022341.1 → XP_027878142.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    TIGR02521
    Location:473 → 606
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    sd00006
    Location:482 → 510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:291 → 353
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_028022340.1 → XP_027878141.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:468 → 734
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:482 → 510
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:291 → 353
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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