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nalcn sodium leak channel, non-selective [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114147747, updated on 15-Mar-2024

Summary

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Gene symbol
nalcn
Gene description
sodium leak channel, non-selective
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
47
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 7 NC_040234.1 (9512327..9588371)

Chromosome 7 - NC_040234.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 14 Neighboring gene uncharacterized LOC114148598 Neighboring gene integrin, beta-like 1 Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 4 Neighboring gene zic family member 2 (odd-paired homolog, Drosophila), a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040234.1 Chromosome 7 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium leak channel non-selective protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040234.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    9512327..9588371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028022335.1 → XP_027878136.1  sodium leak channel non-selective protein isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:911 → 1185
    Ion_trans; Ion transport protein

  2. XM_028022337.1 → XP_027878138.1  sodium leak channel non-selective protein isoform X2

    Conserved Domains (1) summary
    pfam00520
    Location:906 → 1180
    Ion_trans; Ion transport protein

  3. XM_028022338.1 → XP_027878139.1  sodium leak channel non-selective protein isoform X3

    Conserved Domains (1) summary
    pfam00520
    Location:886 → 1160
    Ion_trans; Ion transport protein

  4. XM_028022336.1 → XP_027878137.1  sodium leak channel non-selective protein isoform X1

    Conserved Domains (1) summary
    pfam00520
    Location:911 → 1185
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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