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si:dkey-199f5.8 beta-1,4-galactosyltransferase 3-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114141594, updated on 15-Mar-2024

Summary

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Gene symbol
si:dkey-199f5.8
Gene description
beta-1,4-galactosyltransferase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-199f5.8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 3 NC_040230.1 (1157340..1172092, complement)

Chromosome 3 - NC_040230.1Genomic Context describing neighboring genes Neighboring gene CD82 antigen-like Neighboring gene zinc finger protein 2-like Neighboring gene proteasome 26S subunit, ATPase 4 Neighboring gene uncharacterized LOC114142360

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040230.1 Chromosome 3 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040230.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    1157340..1172092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028012226.1 → XP_027868027.1  beta-1,4-galactosyltransferase 3-like

    Conserved Domains (1) summary
    cd00899
    Location:128 → 346
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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