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st8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114141471, updated on 15-Mar-2024

Summary

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Gene symbol
st8sia1
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See st8sia1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) Unplaced Scaffold NW_020963016.1 (156861..177607)

NW_020963016.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 1, like Neighboring gene IQ motif and Sec7 domain ArfGEF 3a Neighboring gene troponin I, skeletal, slow d Neighboring gene uncharacterized LOC114141475 Neighboring gene ATPase plasma membrane Ca2+ transporting 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020963016 Unplaced Scaffold Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NW_020963016.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    156861..177607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028012025.1 → XP_027867826.1  alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

    UniProtKB/TrEMBL
    A0A3B5M3C7
    Conserved Domains (1) summary
    pfam00777
    Location:72 → 322
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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