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LOC114140193 beta-1,3-galactosyltransferase 1-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114140193, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114140193
Gene description
beta-1,3-galactosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC114140193 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 24 NC_040251.1 (1673693..1790547, complement)

Chromosome 24 - NC_040251.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 11b Neighboring gene uncharacterized LOC114140317 Neighboring gene xin actin binding repeat containing 2a Neighboring gene cysteine/serine-rich nuclear protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040251.1 Chromosome 24 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040251.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    1673693..1790547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028009903.1 → XP_027865704.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5MVD4
    Conserved Domains (1) summary
    pfam01762
    Location:102 → 289
    Galactosyl_T; Galactosyltransferase

  2. XM_028009902.1 → XP_027865703.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5MVD4
    Conserved Domains (1) summary
    pfam01762
    Location:102 → 289
    Galactosyl_T; Galactosyltransferase

  3. XM_028009905.1 → XP_027865706.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5MVD4
    Conserved Domains (1) summary
    pfam01762
    Location:102 → 289
    Galactosyl_T; Galactosyltransferase

  4. XM_028009904.1 → XP_027865705.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A3B5MVD4
    Conserved Domains (1) summary
    pfam01762
    Location:102 → 289
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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