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hs6st2 heparan sulfate 6-O-sulfotransferase 2 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114139675, updated on 15-Mar-2024

Summary

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Gene symbol
hs6st2
Gene description
heparan sulfate 6-O-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See hs6st2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
2
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 23 NC_040250.1 (6249735..6253565)

Chromosome 23 - NC_040250.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114138856 Neighboring gene solute carrier family 25 member 48 Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene muscleblind-like splicing regulator 3 Neighboring gene RAP2C, member of RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040250.1 Chromosome 23 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040250.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    6249735..6253565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028009722.1 → XP_027865523.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X1

    Conserved Domains (1) summary
    pfam03567
    Location:102 → 367
    Sulfotransfer_2; Sulfotransferase family

  2. XM_028009723.1 → XP_027865524.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:102 → 366
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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