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unm_hu7910 un-named hu7910 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114136426, updated on 15-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
32
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 21 NC_040248.1 (927870..950454, complement)

Chromosome 21 - NC_040248.1Genomic Context describing neighboring genes Neighboring gene clavesin-1-like Neighboring gene RIO kinase 3 (yeast) Neighboring gene uncharacterized LOC114136487 Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene uncharacterized LOC114136495 Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040248.1 Chromosome 21 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like; calponin homology domain-containing protein DDB_G0272472-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040248.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    927870..950454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028004405.1 → XP_027860206.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:24 → 286
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:330 → 494
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:400 → 426
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:569 → 723
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_028004404.1 → XP_027860205.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 300
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:344 → 508
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:414 → 440
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:583 → 737
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_028004402.1 → XP_027860203.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 313
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:357 → 521
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:427 → 453
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:596 → 750
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_028004403.1 → XP_027860204.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 303
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:347 → 511
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:417 → 443
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:586 → 740
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_028004400.1 → XP_027860201.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 315
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:359 → 523
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:429 → 455
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:598 → 752
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_028004407.1 → XP_027860208.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 252
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:308 → 472
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:378 → 404
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:547 → 701
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_028004408.1 → XP_027860209.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X8

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 261
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:305 → 469
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:375 → 401
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:544 → 698
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_028004406.1 → XP_027860207.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 276
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:320 → 484
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:390 → 416
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:559 → 713
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_028004410.1 → XP_027860211.1  calponin homology domain-containing protein DDB_G0272472-like isoform X10

    Conserved Domains (1) summary
    PTZ00121
    Location:204 → 637
    PTZ00121; MAEBL; Provisional

  10. XM_028004409.1 → XP_027860210.1  calponin homology domain-containing protein DDB_G0272472-like isoform X9

    Conserved Domains (1) summary
    PTZ00121
    Location:157 → 639
    PTZ00121; MAEBL; Provisional
Nucleotide Protein
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