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LOC114135177 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114135177, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114135177
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC114135177 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 20 NC_040247.1 (23754205..23758183, complement)

Chromosome 20 - NC_040247.1Genomic Context describing neighboring genes Neighboring gene Rho related BTB domain containing 3 Neighboring gene glutaredoxin (thioltransferase) Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene proprotein convertase subtilisin/kexin type 1 Neighboring gene catechol-O-methyltransferase b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040247.1 Chromosome 20 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040247.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    23754205..23758183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028002191.1 → XP_027857992.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A3B5LLB5
    Conserved Domains (1) summary
    cl11394
    Location:78 → 337
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_028002189.1 → XP_027857990.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:108 → 367
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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