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ppm1aa protein phosphatase, Mg2+/Mn2+ dependent, 1Aa [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114133823, updated on 15-Mar-2024

Summary

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Gene symbol
ppm1aa
Gene description
protein phosphatase, Mg2+/Mn2+ dependent, 1Aa
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
ppm1a
Orthologs
human zebrafish all
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Genomic context

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See ppm1aa in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 19 NC_040246.1 (18828017..18884775)

Chromosome 19 - NC_040246.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 9 Neighboring gene pecanex 4 Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene uncharacterized LOC114133825 Neighboring gene uncharacterized LOC114133824 Neighboring gene SIX homeobox 6a Neighboring gene SIX homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040246.1 Chromosome 19 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1A
Names
protein phosphatase, Mg2+/Mn2+ dependent 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040246.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    18828017..18884775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027999917.1 → XP_027855718.1  protein phosphatase 1A isoform X2

    UniProtKB/TrEMBL
    A0A3B5LKY7
    Conserved Domains (2) summary
    cd00143
    Location:23 → 292
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:286 → 362
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  2. XM_027999915.1 → XP_027855716.1  protein phosphatase 1A isoform X1

    UniProtKB/TrEMBL
    A0A3B5LKY7
    Conserved Domains (2) summary
    cd00143
    Location:23 → 292
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:286 → 362
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  3. XM_027999920.1 → XP_027855721.1  protein phosphatase 1A isoform X4

    UniProtKB/TrEMBL
    A0A3B5LKY7
    Conserved Domains (2) summary
    cd00143
    Location:23 → 292
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:286 → 362
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  4. XM_027999918.1 → XP_027855719.1  protein phosphatase 1A isoform X3

    UniProtKB/TrEMBL
    A0A3B5LKY7
    Conserved Domains (2) summary
    cd00143
    Location:23 → 292
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:286 → 362
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  5. XM_027999916.1 → XP_027855717.1  protein phosphatase 1A isoform X1

    UniProtKB/TrEMBL
    A0A3B5LKY7
    Conserved Domains (2) summary
    cd00143
    Location:23 → 292
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:286 → 362
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain
Nucleotide Protein
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