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six6a SIX homeobox 6a [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114133773, updated on 15-Mar-2024

Summary

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Gene symbol
six6a
Gene description
SIX homeobox 6a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
six6
Orthologs
zebrafish all
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Genomic context

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See six6a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 19 NC_040246.1 (18892018..18895704)

Chromosome 19 - NC_040246.1Genomic Context describing neighboring genes Neighboring gene pecanex 4 Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Aa Neighboring gene uncharacterized LOC114133825 Neighboring gene uncharacterized LOC114133824 Neighboring gene SIX homeobox 1 Neighboring gene SIX homeobox 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040246.1 Chromosome 19 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX6
Names
SIX homeobox 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040246.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    18892018..18895704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027999848.1 → XP_027855649.1  homeobox protein SIX6

    UniProtKB/TrEMBL
    A0A3B5LSD9
    Conserved Domains (2) summary
    cd00086
    Location:130 → 178
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:9 → 122
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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