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lrrc9 leucine rich repeat containing 9 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114133763, updated on 12-Sep-2024

Summary

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Gene symbol
lrrc9
Gene description
leucine rich repeat containing 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See lrrc9 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
32
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 19 NC_040246.1 (18757233..18790149)

Chromosome 19 - NC_040246.1Genomic Context describing neighboring genes Neighboring gene tudor domain containing 9 Neighboring gene RD3 like Neighboring gene uncharacterized LOC114134035 Neighboring gene reticulon 1a Neighboring gene pecanex 4 Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Aa Neighboring gene uncharacterized LOC114133825 Neighboring gene uncharacterized LOC114133824

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040246.1 Chromosome 19 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040246.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    18757233..18790149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027999836.1 → XP_027855637.1  leucine-rich repeat-containing protein 9 isoform X2

    Conserved Domains (4) summary
    COG4886
    Location:908 → 1279
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:1100 → 1124
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:720 → 774
    LRR_8; Leucine rich repeat
    pfam14580
    Location:1210 → 1368
    LRR_9; Leucine-rich repeat

  2. XM_027999837.1 → XP_027855638.1  leucine-rich repeat-containing protein 9 isoform X3

    Conserved Domains (4) summary
    COG4886
    Location:864 → 1235
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:1056 → 1080
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:676 → 730
    LRR_8; Leucine rich repeat
    pfam14580
    Location:1166 → 1324
    LRR_9; Leucine-rich repeat

  3. XM_027999838.1 → XP_027855639.1  leucine-rich repeat-containing protein 9 isoform X4

    Conserved Domains (4) summary
    COG4886
    Location:908 → 1279
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:1099 → 1124
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:720 → 774
    LRR_8; Leucine rich repeat
    pfam14580
    Location:107 → 246
    LRR_9; Leucine-rich repeat

  4. XM_027999839.1 → XP_027855640.1  leucine-rich repeat-containing protein 9 isoform X4

    Conserved Domains (4) summary
    COG4886
    Location:908 → 1279
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:1099 → 1124
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:720 → 774
    LRR_8; Leucine rich repeat
    pfam14580
    Location:107 → 246
    LRR_9; Leucine-rich repeat

  5. XM_027999835.1 → XP_027855636.1  leucine-rich repeat-containing protein 9 isoform X1

    Conserved Domains (4) summary
    COG4886
    Location:908 → 1279
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:1100 → 1124
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:720 → 774
    LRR_8; Leucine rich repeat
    pfam14580
    Location:1210 → 1368
    LRR_9; Leucine-rich repeat
Nucleotide Protein
Heading Accession and Version

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