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LOC11412568 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Medicago truncatula (barrel medic) ]

Gene ID: 11412568, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11412568
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Locus tag
MtrunA17_Chr1g0153481
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11412568 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (5969278..5972743, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (5911763..5915231, complement)

Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene hydroquinone glucosyltransferase Neighboring gene UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene TMV resistance protein N Neighboring gene cytosolic Fe-S cluster assembly factor NBP35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Names
putative glucuronosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    5969278..5972743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003589149.4 → XP_003589197.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_003589197.1

    UniProtKB/TrEMBL
    G7I3L3
    Conserved Domains (1) summary
    cd02537
    Location:301 → 545
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_003589150.4 → XP_003589198.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    See identical proteins and their annotated locations for XP_003589198.1

    UniProtKB/TrEMBL
    G7I3L4
    Conserved Domains (2) summary
    cd02537
    Location:248 → 492
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:323 → 459
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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