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LOC114119523 longitudinals lacking protein [ Aphis gossypii (cotton aphid) ]

Gene ID: 114119523, updated on 23-Nov-2023

Summary

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Gene symbol
LOC114119523
Gene description
longitudinals lacking protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Aphis gossypii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Aphidini; Aphis; Aphis
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Genomic context

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See LOC114119523 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2018417v2 (GCF_020184175.1) 1 NC_065530.1 (87260257..87288942, complement)
100 previous assembly ASM401081v1 (GCF_004010815.1) Unplaced Scaffold NW_021006078.1 (4681218..4706362, complement)

Chromosome 1 - NC_065530.1Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 3-like protein nst Neighboring gene exocyst complex component 7 Neighboring gene NADH dehydrogenase ubiquinone Neighboring gene uncharacterized LOC114123585 Neighboring gene uncharacterized LOC114132463

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
longitudinals lacking protein, isoforms A/B/D/L-like; longitudinals lacking protein, isoforms F/I/K/T-like; longitudinals lacking protein, isoforms H/M/V-like; longitudinals lacking protein, isoforms N/O/W/X/Y-like; longitudinals lacking protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aphis gossypii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2018417v2 Primary Assembly

Genomic

  1. NC_065530.1 Reference ASM2018417v2 Primary Assembly

    Range
    87260257..87288942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050205448.1 → XP_050061405.1  longitudinals lacking protein, isoforms F/I/K/T-like isoform X10

  2. XM_027981606.2 → XP_027837407.1  longitudinals lacking protein, isoforms F/I/K/T-like isoform X9

  3. XM_050205453.1 → XP_050061410.1  longitudinals lacking protein, isoforms H/M/V-like isoform X11

  4. XM_050205406.1 → XP_050061363.1  longitudinals lacking protein, isoforms F/I/K/T-like isoform X4

  5. XM_027981297.2 → XP_027837098.1  longitudinals lacking protein, isoforms F/I/K/T-like isoform X3

  6. XM_027981457.2 → XP_027837258.1  longitudinals lacking protein-like isoform X6

  7. XM_027981382.2 → XP_027837183.1  longitudinals lacking protein, isoforms N/O/W/X/Y-like isoform X5

  8. XM_027981219.2 → XP_027837020.1  longitudinals lacking protein, isoforms A/B/D/L-like isoform X2

  9. XM_027981138.2 → XP_027836939.1  longitudinals lacking protein, isoforms A/B/D/L-like isoform X1

    UniProtKB/TrEMBL
    A0A9P0IUH9

  10. XM_050205442.1 → XP_050061399.1  longitudinals lacking protein, isoforms A/B/D/L-like isoform X8

  11. XM_027981536.2 → XP_027837337.1  longitudinals lacking protein, isoforms A/B/D/L-like isoform X7

Nucleotide Protein
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