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LOC11411703 rhamnogalacturonan I rhamnosyltransferase 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11411703, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11411703
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
MtrunA17_Chr2g0307971
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11411703 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (30538664..30542401, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (24493299..24497042, complement)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene flavonol 3-O-glucosyltransferase UGT89B1 Neighboring gene late embryogenesis abundant protein 2 Neighboring gene uncharacterized LOC112419397 Neighboring gene aspartic proteinase CDR1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1
Names
GDP-fucose O-fucosyltransferase-like protein
O-fucosyltransferase 34
putative GDP-fucose protein O-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    30538664..30542401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003595655.4 → XP_003595703.2  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A0C3V3L4, G7IT24
    Conserved Domains (1) summary
    cd11299
    Location:118 → 443
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
Heading Accession and Version

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