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LOC11411516 hydroxyproline O-galactosyltransferase HPGT1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11411516, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11411516
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Locus tag
MtrunA17_Chr3g0126221
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11411516 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (44569054..44575911)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (41114353..41121219)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein DOF1.2 Neighboring gene protein MKS1 Neighboring gene uncharacterized LOC11422212 Neighboring gene uncharacterized LOC112420408

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1
Names
beta-1,3-galactosyltransferase-like protein
putative galactosylxylosylprotein 3-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    44569054..44575911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013605940.3 → XP_013461394.1  hydroxyproline O-galactosyltransferase HPGT1 isoform X2

    UniProtKB/TrEMBL
    A0A072V0A6, A0A072VB91
    Conserved Domains (2) summary
    pfam13334
    Location:17 → 95
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:128 → 322
    Galactosyl_T; Galactosyltransferase

  2. XM_003602121.4 → XP_003602169.2  hydroxyproline O-galactosyltransferase HPGT1 isoform X1

    UniProtKB/TrEMBL
    A0A072V178, A0A0C3VM23, G7J676
    Conserved Domains (2) summary
    pfam13334
    Location:17 → 95
    DUF4094; Domain of unknown function (DUF4094)
    cl26217
    Location:80 → 339
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
Heading Accession and Version

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