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LOC11410708 cellulose synthase A catalytic subunit 7 [UDP-forming] [ Medicago truncatula (barrel medic) ]

Gene ID: 11410708, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11410708
Gene description
cellulose synthase A catalytic subunit 7 [UDP-forming]
Locus tag
MtrunA17_Chr8g0364641
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11410708 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (28980950..28986893, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (26495673..26501642, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene protein LSM12 homolog Neighboring gene cytochrome P450 89A2 Neighboring gene cytochrome P450 89A2 Neighboring gene putative pentatricopeptide repeat-containing protein At3g49142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 7 [UDP-forming]
Names
cellulose synthase-like protein
putative cellulose synthase (UDP-forming) chromatin regulator PHD family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    28980950..28986893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013590458.3 → XP_013445912.2  cellulose synthase A catalytic subunit 7 [UDP-forming]

    UniProtKB/TrEMBL
    G7LFG6
    Conserved Domains (1) summary
    cl28038
    Location:1 → 982
    Cellulose_synt; Cellulose synthase
Nucleotide Protein
Heading Accession and Version

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