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LOC11407124 hydroxyproline O-galactosyltransferase GALT6 [ Medicago truncatula (barrel medic) ]

Gene ID: 11407124, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11407124
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
MtrunA17_Chr8g0363761
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11407124 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (28370239..28375303, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (25868671..25873737, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene histone H3.3 Neighboring gene glutathione S-transferase U17 Neighboring gene ABC transporter C family member 14 Neighboring gene FBD-associated F-box protein At4g10400

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6
Names
beta-1,3-galactosyltransferase-like protein
putative galactosylxylosylprotein 3-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    28370239..28375303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003628514.4 → XP_003628562.1  hydroxyproline O-galactosyltransferase GALT6

    See identical proteins and their annotated locations for XP_003628562.1

    UniProtKB/TrEMBL
    G7LDT0
    Conserved Domains (1) summary
    PLN03133
    Location:113 → 652
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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