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SDC3 syndecan 3 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 114020900, updated on 15-Mar-2024

Summary

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Gene symbol
SDC3
Gene description
syndecan 3
Locus tag
UY3_12957
See related
EnsemblRapid:ENSCMYG00015008378
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SDC3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 19 NC_051259.2 (14815049..15005238, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 19 NC_051259.1 (4764574..4950656)

Chromosome 19 - NC_051259.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122463304 Neighboring gene lysosomal protein transmembrane 5 Neighboring gene uncharacterized LOC122463358 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene pumilio RNA binding family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051259.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    14815049..15005238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037881933.2 → XP_037737861.1  syndecan-3 isoform X2

    UniProtKB/TrEMBL
    M7B3A6
    Related
    ENSCMYP00015012951.1, ENSCMYT00015015683.1
    Conserved Domains (1) summary
    pfam01034
    Location:338 → 400
    Syndecan; Syndecan domain

  2. XM_043532280.1 → XP_043388215.1  syndecan-3 isoform X3

    UniProtKB/TrEMBL
    M7B3A6
    Related
    ENSCMYP00015012944.1, ENSCMYT00015015669.1
    Conserved Domains (1) summary
    smart00294
    Location:355 → 373
    4.1m; putative band 4.1 homologues' binding motif

  3. XM_043532278.1 → XP_043388213.1  syndecan-3 isoform X1

    UniProtKB/TrEMBL
    M7B3A6
    Related
    ENSCMYP00015012938.1, ENSCMYT00015015657.1
    Conserved Domains (1) summary
    smart00294
    Location:404 → 422
    4.1m; putative band 4.1 homologues' binding motif
Nucleotide Protein
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