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GPN1 GPN-loop GTPase 1 [ Pipra filicauda (Wire-tailed manakin) ]

Gene ID: 114002995, updated on 3-Aug-2024

Summary

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Gene symbol
GPN1
Gene description
GPN-loop GTPase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pipra filicauda
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Pipra
Orthologs
human mouse all
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Genomic context

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See GPN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM394559v2 (GCF_003945595.2) Unplaced Scaffold NW_024104718.1 (248071..263624)
100 previous assembly ASM394559v1 (GCF_003945595.1) Unplaced Scaffold NW_020896905.1 (395271..410830)

NW_024104718.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114002998 Neighboring gene zinc finger protein 512 Neighboring gene uncharacterized LOC120324509

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPN-loop GTPase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pipra filicauda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM394559v2

Genomic

  1. NW_024104718.1 Reference ASM394559v2

    Range
    248071..263624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039387467.1 → XP_039243401.1  GPN-loop GTPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2IYU0
    Conserved Domains (1) summary
    cd17870
    Location:13 → 251
    GPN1; GPN-loop GTPase 1

  2. XM_027749470.2 → XP_027605271.2  GPN-loop GTPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J2IZV7
    Conserved Domains (1) summary
    cd17870
    Location:13 → 251
    GPN1; GPN-loop GTPase 1

  3. XM_027749469.2 → XP_027605270.1  GPN-loop GTPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2IYU0
    Conserved Domains (1) summary
    cd17870
    Location:13 → 251
    GPN1; GPN-loop GTPase 1

  4. XM_039387468.1 → XP_039243402.1  GPN-loop GTPase 1 isoform X3

    UniProtKB/TrEMBL
    A0A7R5L1Q8
    Conserved Domains (1) summary
    cd17870
    Location:1 → 153
    GPN1; GPN-loop GTPase 1
Nucleotide Protein
Heading Accession and Version

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