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SLC3A1 solute carrier family 3 member 1 [ Zalophus californianus (California sea lion) ]

Gene ID: 113938700, updated on 15-Mar-2024

Summary

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Gene symbol
SLC3A1
Gene description
solute carrier family 3 member 1
See related
EnsemblRapid:ENSZCAG00025010371
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See SLC3A1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 8 NC_045602.1 (75690755..75724411, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020875357.1 (81670684..81704348, complement)

Chromosome 8 - NC_045602.1Genomic Context describing neighboring genes Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene thymosin beta-10 Neighboring gene protein SET-like Neighboring gene prolyl endopeptidase like Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene uncharacterized LOC113937846

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral and basic amino acid transport protein rBAT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045602.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    75690755..75724411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027624222.2 → XP_027480023.1  neutral and basic amino acid transport protein rBAT

    UniProtKB/TrEMBL
    A0A6J2FJ44
    Related
    ENSZCAP00025016294.1, ENSZCAT00025018473.1
    Conserved Domains (2) summary
    cd11359
    Location:112 → 565
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    pfam16028
    Location:61 → 118
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus
Nucleotide Protein
Heading Accession and Version

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