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SPHK2 sphingosine kinase 2 [ Zalophus californianus (California sea lion) ]

Gene ID: 113935283, updated on 15-Mar-2024

Summary

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Gene symbol
SPHK2
Gene description
sphingosine kinase 2
See related
EnsemblRapid:ENSZCAG00025015280
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See SPHK2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 17 NC_045611.1 (52476931..52485197)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874921.1 (7693915..7702181, complement)

Chromosome 17 - NC_045611.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 83 member E Neighboring gene sperm acrosome associated 4 Neighboring gene ribosomal protein L18 Neighboring gene galactoside alpha-(1,2)-fucosyltransferase 2-like Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene carbonic anhydrase 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine-1-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045611.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    52476931..52485197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027617035.2 → XP_027472836.1  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J2F537

  2. XM_027617038.2 → XP_027472839.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J2EV75
    Related
    ENSZCAP00025023924.1, ENSZCAT00025027138.1

  3. XM_027617044.2 → XP_027472845.1  sphingosine kinase 2 isoform X5

    UniProtKB/TrEMBL
    A0A6J2EUW0

  4. XM_027617037.1 → XP_027472838.1  sphingosine kinase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J2F537

  5. XM_027617040.1 → XP_027472841.1  sphingosine kinase 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2EX55

  6. XM_027617041.1 → XP_027472842.1  sphingosine kinase 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2EX55

  7. XM_027617045.1 → XP_027472846.1  sphingosine kinase 2 isoform X6

    UniProtKB/TrEMBL
    A0A6J2EX60

  8. XM_027617039.2 → XP_027472840.1  sphingosine kinase 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J2EX55
    Related
    ENSZCAP00025023947.1, ENSZCAT00025027171.1

  9. XM_027617043.1 → XP_027472844.1  sphingosine kinase 2 isoform X4

    UniProtKB/TrEMBL
    A0A6J2EV81

  10. XM_027617046.1 → XP_027472847.1  sphingosine kinase 2 isoform X7

    UniProtKB/TrEMBL
    A0A6J2F150
Nucleotide Protein
Heading Accession and Version

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