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GLDC glycine decarboxylase [ Zalophus californianus (California sea lion) ]

Gene ID: 113934774, updated on 15-Mar-2024

Summary

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Gene symbol
GLDC
Gene description
glycine decarboxylase
See related
EnsemblRapid:ENSZCAG00025021485
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See GLDC in Genome Data Viewer
Location:
chromosome: 13
Exon count:
30
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 13 NC_045607.1 (62626262..62779679)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874788.1 (31139654..31289170, complement)

Chromosome 13 - NC_045607.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 4C Neighboring gene 60S ribosomal protein L34-like Neighboring gene prolyl hydroxylase EGLN2-like Neighboring gene 60S ribosomal protein L12-like Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene 60S acidic ribosomal protein P1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine decarboxylation via glycine cleavage system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycine cleavage complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine dehydrogenase (decarboxylating), mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045607.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    62626262..62779679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027616322.1 → XP_027472123.1  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    A0A6J2ET74

  2. XM_027616323.1 → XP_027472124.1  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    A0A6J2ET74
    Related
    ENSZCAP00025034006.1, ENSZCAT00025038409.1
Nucleotide Protein
Heading Accession and Version

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