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BCKDHB branched chain keto acid dehydrogenase E1 subunit beta [ Zalophus californianus (California sea lion) ]

Gene ID: 113927687, updated on 11-Apr-2024

Summary

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Gene symbol
BCKDHB
Gene description
branched chain keto acid dehydrogenase E1 subunit beta
See related
EnsemblRapid:ENSZCAG00025018162
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See BCKDHB in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 7 NC_045601.1 (77449690..77668545, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874467.1 (76844182..77057224, complement)

Chromosome 7 - NC_045601.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S17-like Neighboring gene centrosomal protein of 19 kDa-like Neighboring gene TTK protein kinase Neighboring gene ELOVL fatty acid elongase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in branched-chain amino acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to nutrient IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045601.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    77449690..77668545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027603713.2 → XP_027459514.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A6J2DT85

  2. XM_027603709.2 → XP_027459510.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A6J2DSN7

  3. XM_027603710.2 → XP_027459511.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A6J2DUR9
    Related
    ENSZCAP00025028456.1, ENSZCAT00025032252.1
    Conserved Domains (1) summary
    PTZ00182
    Location:40 → 393
    PTZ00182; 3-methyl-2-oxobutanate dehydrogenase; Provisional

  4. XM_027603711.2 → XP_027459512.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A6J2DXQ7

  5. XM_027603712.2 → XP_027459513.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A6J2DZX0
    Conserved Domains (1) summary
    PTZ00182
    Location:40 → 320
    PTZ00182; 3-methyl-2-oxobutanate dehydrogenase; Provisional

RNA

  1. XR_003521718.2 RNA Sequence

  2. XR_003521717.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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