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ZRANB1 zinc finger RANBP2-type containing 1 [ Zalophus californianus (California sea lion) ]

Gene ID: 113919422, updated on 15-Mar-2024

Summary

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Gene symbol
ZRANB1
Gene description
zinc finger RANBP2-type containing 1
See related
EnsemblRapid:ENSZCAG00025025013
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See ZRANB1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 15 NC_045609.1 (81460983..81526949)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874462.1 (7409661..7475616, complement)

Chromosome 15 - NC_045609.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 53 member B Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene C-terminal binding protein 2 Neighboring gene uncharacterized LOC118356313 Neighboring gene collagen alpha-1(I) chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase ZRANB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045609.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    81460983..81526949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035724114.1 → XP_035580007.1  ubiquitin thioesterase ZRANB1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9FGW9
    Related
    ENSZCAP00025039503.1, ENSZCAT00025044566.1
    Conserved Domains (4) summary
    smart00547
    Location:152 → 175
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:88 → 107
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:438 → 586
    OTU; OTU-like cysteine protease
    pfam18418
    Location:246 → 341
    AnkUBD; Ankyrin ubiquitin-binding domain

  2. XM_027588475.2 → XP_027444276.1  ubiquitin thioesterase ZRANB1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2CLN4
    Related
    ENSZCAP00025039513.1, ENSZCAT00025044576.1
    Conserved Domains (3) summary
    smart00547
    Location:152 → 175
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:88 → 107
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:438 → 586
    OTU; OTU-like cysteine protease

  3. XM_027588502.2 → XP_027444303.1  ubiquitin thioesterase ZRANB1 isoform X3

    UniProtKB/TrEMBL
    A0A6J2CQE0
    Conserved Domains (1) summary
    cd22767
    Location:79 → 265
    OTU_ZRANB1; OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins

  4. XM_027588493.1 → XP_027444294.1  ubiquitin thioesterase ZRANB1 isoform X3

    UniProtKB/TrEMBL
    A0A6J2CQE0
    Conserved Domains (1) summary
    cd22767
    Location:79 → 265
    OTU_ZRANB1; OTU (ovarian tumor) domain of Ubiquitin thioesterase ZRANB1 and similar proteins

  5. XM_027588507.1 → XP_027444308.1  ubiquitin thioesterase ZRANB1 isoform X4

    UniProtKB/TrEMBL
    A0A6J2CQE6
Nucleotide Protein
Heading Accession and Version

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