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LYPD6 LY6/PLAUR domain containing 6 [ Zalophus californianus (California sea lion) ]

Gene ID: 113919233, updated on 15-Mar-2024

Summary

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Gene symbol
LYPD6
Gene description
LY6/PLAUR domain containing 6
See related
EnsemblRapid:ENSZCAG00025013477
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See LYPD6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 3 NC_045597.1 (115469508..115587144)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020884869.1 (79668604..79786191, complement)

Chromosome 3 - NC_045597.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36-like Neighboring gene kinesin family member 5C Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene uncharacterized LOC113919713 Neighboring gene metabolism of cobalamin associated D Neighboring gene uncharacterized LOC113919712

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine receptor inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045597.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    115469508..115587144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027588043.2 → XP_027443844.1  ly6/PLAUR domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A6J2CHQ2
    Conserved Domains (1) summary
    pfam16975
    Location:41 → 145
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6

  2. XM_027588045.2 → XP_027443846.1  ly6/PLAUR domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A6J2CKH3

  3. XM_027588044.2 → XP_027443845.1  ly6/PLAUR domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A6J2CHQ2
    Related
    ENSZCAP00025021198.1, ENSZCAT00025024043.1
    Conserved Domains (1) summary
    pfam16975
    Location:41 → 145
    UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
Nucleotide Protein
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