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CNTN5 contactin 5 [ Zalophus californianus (California sea lion) ]

Gene ID: 113915408, updated on 15-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
EnsemblRapid:ENSZCAG00025013092
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
27
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 11 NC_045605.1 (32491676..33891985, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020879070.1 (78577500..79964958)

Chromosome 11 - NC_045605.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113914571 Neighboring gene Rho GTPase activating protein 42 Neighboring gene progesterone receptor Neighboring gene peroxisomal coenzyme A diphosphatase NUDT7-like Neighboring gene solute carrier family 25 member 40-like Neighboring gene ADP-ribosylation factor-like protein 2-binding protein Neighboring gene V-type proton ATPase subunit D-like Neighboring gene glutathione S-transferase P-like Neighboring gene electron transfer flavoprotein beta subunit lysine methyltransferase-like Neighboring gene X-ray repair cross-complementing protein 6-like Neighboring gene ubiquitin-conjugating enzyme E2 L3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045605.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    32491676..33891985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027581317.2 → XP_027437118.1  contactin-5

    UniProtKB/TrEMBL
    A0A6J2C534
    Related
    ENSZCAP00025020715.1, ENSZCAT00025023510.1
Nucleotide Protein
Heading Accession and Version

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