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SLC5A1 solute carrier family 5 member 1 [ Zalophus californianus (California sea lion) ]

Gene ID: 113913253, updated on 18-Sep-2024

Summary

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Gene symbol
SLC5A1
Gene description
solute carrier family 5 member 1
See related
EnsemblRapid:ENSZCAG00025023860
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See SLC5A1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 14 NC_045608.1 (24822374..24953332)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020878390.1 (23571061..23701946)

Chromosome 14 - NC_045608.1Genomic Context describing neighboring genes Neighboring gene YWHAH antisense RNA 1 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene ubiquitin-conjugating enzyme E2 N-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-glucose:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/glucose cotransporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045608.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    24822374..24953332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027577413.2 → XP_027433214.1  sodium/glucose cotransporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J2BMN8

  2. XM_027577412.2 → XP_027433213.1  sodium/glucose cotransporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J2BTU7
    Related
    ENSZCAP00025037690.1, ENSZCAT00025042556.1
    Conserved Domains (1) summary
    cl00456
    Location:27 → 662
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_027577414.2 → XP_027433215.1  sodium/glucose cotransporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J2BMH6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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