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LOC113865827 probable beta-1,4-xylosyltransferase IRX9H [ Abrus precatorius (Indian licorice) ]

Gene ID: 113865827, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113865827
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Abrus precatorius
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Genomic context

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See LOC113865827 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Abrus_2018 (GCF_003935025.1) Unplaced Scaffold NW_020874384.1 (15776523..15780626, complement)

NW_020874384.1Genomic Context describing neighboring genes Neighboring gene tocopherol cyclase, chloroplastic Neighboring gene stress-response A/B barrel domain-containing protein HS1 Neighboring gene ER membrane protein complex subunit 1 Neighboring gene uncharacterized LOC113866191

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020874384 Unplaced Scaffold Reference Abrus_2018

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Abrus precatorius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Abrus_2018

Genomic

  1. NW_020874384.1 Reference Abrus_2018

    Range
    15776523..15780626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027500600.1 → XP_027356401.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A8B8LJ45
Nucleotide Protein
Heading Accession and Version

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