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LOC113830346 transmembrane and TPR repeat-containing protein 2-like [ Penaeus vannamei (Pacific white shrimp) ]

Gene ID: 113830346, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113830346
Gene description
transmembrane and TPR repeat-containing protein 2-like
Locus tag
C7M84_002431
See related
EnsemblRapid:LOC113830346
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus vannamei
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC113830346 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM378908v1 (GCF_003789085.1) Unplaced Scaffold NW_020868646.1 (559348..578859, complement)

NW_020868646.1Genomic Context describing neighboring genes Neighboring gene angiopoietin-related protein 6-like Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene cartilage oligomeric matrix protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020868646 Unplaced Scaffold Reference ASM378908v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like
Names
putative O-linked N-acetylglucosamine transferase, OGT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus vannamei Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM378908v1 Primary Assembly

Genomic

  1. NW_020868646.1 Reference ASM378908v1 Primary Assembly

    Range
    559348..578859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027383559.1 → XP_027239360.1  transmembrane and TPR repeat-containing protein 2-like

    Related
    XP_027239360.1, XM_027383559.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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