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LOC113828173 transmembrane and TPR repeat-containing protein 2-like [ Penaeus vannamei (Pacific white shrimp) ]

Gene ID: 113828173, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113828173
Gene description
transmembrane and TPR repeat-containing protein 2-like
See related
EnsemblRapid:LOC113828173
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus vannamei
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC113828173 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM378908v1 (GCF_003789085.1) Unplaced Scaffold NW_020872302.1 (73932..91902)

NW_020872302.1Genomic Context describing neighboring genes Neighboring gene myoneurin-like Neighboring gene RAN, member RAS oncogene family Neighboring gene BUD13 homolog Neighboring gene collagen alpha-1(III) chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020872302 Unplaced Scaffold Reference ASM378908v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of Litopenaeus vannamei transcriptome using the next-generation DNA sequencing technique. Li C, et al. PLoS One, 2012. PMID 23071809, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus vannamei Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM378908v1 Primary Assembly

Genomic

  1. NW_020872302.1 Reference ASM378908v1 Primary Assembly

    Range
    73932..91902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027381108.1 → XP_027236909.1  transmembrane and TPR repeat-containing protein 2-like

    Related
    XP_027236909.1, XM_027381108.1
Nucleotide Protein
Heading Accession and Version

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