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LOC113815366 carotenoid isomerooxygenase-like [ Penaeus vannamei (Pacific white shrimp) ]

Gene ID: 113815366, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113815366
Gene description
carotenoid isomerooxygenase-like
Locus tag
C7M84_012811
See related
EnsemblRapid:LOC113815366
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus vannamei
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC113815366 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM378908v1 (GCF_003789085.1) Unplaced Scaffold NW_020870084.1 (201978..219329, complement)

NW_020870084.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113815364 Neighboring gene uncharacterized LOC113815365 Neighboring gene beta,beta-carotene 15,15'-dioxygenase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020870084 Unplaced Scaffold Reference ASM378908v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus vannamei Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM378908v1 Primary Assembly

Genomic

  1. NW_020870084.1 Reference ASM378908v1 Primary Assembly

    Range
    201978..219329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027367457.1 → XP_027223258.1  carotenoid isomerooxygenase-like

    UniProtKB/TrEMBL
    A0A3R7PJZ1
    Related
    XP_027223258.1, XM_027367457.1
Nucleotide Protein
Heading Accession and Version

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